Basic Information
Locus ID:
BVRB_8g191380
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 29118751 | 29123563 | + | BVRB_8g191380 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 45,485.95 Da | 38.13 | 77.39 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 278 | 312 | 0.08 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 119 | 152 | 2.0E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 240 | 273 | 0.0012 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 115 | 404 | 1.31E-49 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 96 | 236 | 9.8E-20 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 237 | 412 | 9.2E-28 | IPR015943 |
| SMART | SM00320 | WD40_4 | 192 | 229 | 9.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 317 | 360 | 9.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 276 | 313 | 0.0096 | IPR001680 |
| SMART | SM00320 | WD40_4 | 113 | 152 | 4.5E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 363 | 400 | 24.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 236 | 273 | 4.4E-4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 120 | 152 | 12.024679 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 243 | 276 | 10.68014 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 120 | 161 | 15.120162 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 82 | 109 | 12.596043 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 243 | 282 | 14.117617 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 260 | 274 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 300 | 314 | 6.5E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 139 | 153 | 6.5E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 260 | 274 | 6.5E-8 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 51 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_048491351.1 | - | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803MB75 | Zinc finger CCCH domain-containing protein 48-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology