Basic Information
Locus ID:
BVRB_8g184110
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 4647923 | 4668606 | - | BVRB_8g184110 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.16 | 137,687.41 Da | 50.71 | 75.08 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 512 | 816 | 3.01454E-87 | - |
| CDD | cd18793 | SF2_C_SNF | 1088 | 1195 | 1.54253E-53 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1086 | 1185 | 1.7E-15 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 532 | 894 | 6.1E-69 | IPR000330 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 932 | 968 | 9.0E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 931 | 974 | 1.23E-9 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 825 | 1242 | 1.59E-57 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 496 | 816 | 6.25E-45 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 931 | 986 | 4.8E-10 | IPR013083 |
| Gene3D | G3DSA:3.40.50.300 | - | 829 | 930 | 3.2E-5 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 987 | 1242 | 3.8E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 486 | 828 | 1.4E-52 | IPR038718 |
| SMART | SM00487 | ultradead3 | 508 | 783 | 1.7E-27 | IPR014001 |
| SMART | SM00184 | ring_2 | 932 | 970 | 1.6E-4 | IPR001841 |
| SMART | SM00490 | helicmild6 | 1102 | 1185 | 1.4E-18 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 932 | 971 | 10.615647 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1079 | 1238 | 15.338947 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 527 | 778 | 14.074039 | IPR014001 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 947 | 956 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 674 | 692 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1062 | 1081 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 669 | 703 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_010686579.2 | helicase-like transcription factor CHR28 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QNB3 | DNA helicase OS=Spinacia oleracea OX=3562 GN=SOVF_160060 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology