Basic Information
Locus ID:
BVRB_8g183610
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 3681222 | 3693277 | - | BVRB_8g183610 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.04 | 112,532.94 Da | 57.28 | 79.37 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07521 | HAD_FCP1-like | 243 | 378 | 1.71296E-19 | - |
| Pfam | PF00035 | Double-stranded RNA binding motif | 780 | 837 | 4.4E-5 | IPR014720 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 908 | 974 | 3.8E-5 | IPR014720 |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 267 | 376 | 1.2E-6 | IPR004274 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 905 | 977 | 1.31E-12 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 146 | 404 | 8.24E-20 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 777 | 837 | 1.52E-10 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 901 | 980 | 4.7E-9 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 776 | 855 | 7.6E-7 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 146 | 408 | 8.3E-26 | IPR023214 |
| SMART | SM00358 | DRBM_3 | 907 | 975 | 2.5E-5 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 774 | 838 | 1.2E-6 | IPR014720 |
| SMART | SM00577 | forpap2 | 213 | 387 | 4.1E-12 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 773 | 839 | 11.746893 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 152 | 400 | 15.284318 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 906 | 976 | 11.552683 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 866 | 901 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 720 | 768 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 735 | 757 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 720 | 734 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 983 | 1023 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 685 | 706 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_010686545.1 | RNA polymerase II C-terminal domain phosphatase-like 1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QNK5 | protein-serine/threonine phosphatase OS=Spinacia oleracea OX=3562 GN=SOVF_159350 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology