Basic Information
Locus ID:
BVRB_8g183000
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
Transcriptional corepressor LEUNIG-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 2752078 | 2762946 | - | BVRB_8g183000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.36 | 69,983.53 Da | 49.83 | 67.53 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 352 | 631 | 6.38089E-58 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 349 | 380 | 1.8E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 515 | 546 | 0.0065 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 430 | 466 | 0.07 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 389 | 422 | 1.1E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 596 | 630 | 0.026 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 343 | 630 | 7.1E-61 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 302 | 472 | 7.1E-32 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 473 | 631 | 1.2E-29 | IPR015943 |
| SMART | SM00320 | WD40_4 | 592 | 631 | 1.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 341 | 380 | 1.0E-6 | IPR001680 |
| SMART | SM00667 | Lish | 9 | 41 | 0.0026 | IPR006594 |
| SMART | SM00320 | WD40_4 | 469 | 505 | 4.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 426 | 466 | 1.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 550 | 589 | 19.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 508 | 546 | 1.3E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 383 | 422 | 8.4E-7 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 348 | 383 | 9.151057 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 9 | 41 | 9.320454 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 599 | 631 | 12.103769 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 599 | 631 | 12.981398 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 390 | 422 | 13.68318 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 390 | 422 | 11.339228 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 348 | 389 | 11.043142 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 433 | 475 | 12.680634 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 433 | 468 | 10.126507 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 453 | 467 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 142 | 170 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 179 | 199 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 100 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 139 | 199 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 100 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_019106660.1 | transcriptional corepressor LEUNIG isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RWK8 | LisH domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_026770 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology