Basic Information
Locus ID:
BVRB_7g171320
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 38777082 | 38788466 | + | BVRB_7g171320 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.45 | 100,783.61 Da | 48.74 | 83.68 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 702 | 878 | 7.7398E-66 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 282 | 877 | 9.4E-82 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 280 | 880 | 6.08E-108 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 267 | 510 | 4.1E-67 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 7 | 123 | 1.1E-5 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 698 | 893 | 7.8E-56 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 282 | 880 | 56.354202 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 823 | 840 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 283 | 298 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 238 | 257 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 224 | 257 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22030.1 | ubiquitin-specific protease 8. | 0 |
| RefSeq | XP_010685465.1 | ubiquitin carboxyl-terminal hydrolase 8 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9C585 | Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9QF22 | Ubiquitin carboxyl-terminal hydrolase OS=Spinacia oleracea OX=3562 GN=SOVF_186300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology