Basic Information
Locus ID:
BVRB_7g171180
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 38535696 | 38537400 | - | BVRB_7g171180 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.44 | 49,240.47 Da | 37.35 | 97.85 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 12 | 55 | 3.64046E-22 | - |
| Pfam | PF04564 | U-box domain | 8 | 58 | 8.4E-13 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 4 | 103 | 1.61E-20 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 128 | 418 | 6.24E-13 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 108 | 427 | 1.3E-12 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 101 | 1.5E-23 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 11 | 99 | 6.3E-21 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 305 | 349 | 8.8024 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 7 | 106 | 26.627323 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_010685445.1 | - | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LXM4 | RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology