Basic Information
Locus ID:
BVRB_7g171170
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 38512455 | 38514019 | + | BVRB_7g171170 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.89 | 48,567.54 Da | 39.56 | 110.05 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 13 | 58 | 5.59726E-20 | - |
| Pfam | PF04564 | U-box domain | 9 | 82 | 1.9E-21 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 4 | 84 | 4.11E-29 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 119 | 397 | 7.04E-9 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 82 | 411 | 1.8E-9 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 8 | 81 | 1.6E-28 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 12 | 78 | 1.3E-28 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 8 | 85 | 39.373978 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11840.1 | plant U-box 24. Encodes a U-box-domain-containing E3 ubiquitin ligase that acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_010685444.2 | E3 ubiquitin-protein ligase PUB24 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SF15 | E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis thaliana OX=3702 GN=PUB24 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KR98 | RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology