Basic Information
Locus ID:
BVRB_7g167480
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
transcriptional corepressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 31796047 | 31815171 | + | BVRB_7g167480 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 80,669.25 Da | 49.58 | 67.27 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 464 | 740 | 9.92866E-58 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 501 | 534 | 3.6E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 466 | 492 | 0.0018 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 622 | 658 | 8.0E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 708 | 740 | 0.1 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 465 | 740 | 2.29E-57 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 592 | 740 | 1.1E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 457 | 591 | 4.0E-29 | IPR015943 |
| SMART | SM00320 | WD40_4 | 581 | 617 | 12.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 702 | 740 | 0.0013 | IPR001680 |
| SMART | SM00320 | WD40_4 | 661 | 700 | 1.8 | IPR001680 |
| SMART | SM00667 | Lish | 8 | 40 | 0.0083 | IPR006594 |
| SMART | SM00320 | WD40_4 | 454 | 492 | 2.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 538 | 578 | 2.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 620 | 658 | 3.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 495 | 534 | 6.3E-8 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 627 | 667 | 9.271977 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 502 | 537 | 13.449252 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 709 | 740 | 9.678328 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.082561 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 502 | 537 | 11.154684 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 709 | 740 | 9.906923 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 467 | 501 | 10.307941 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 479 | 493 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 521 | 535 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 285 | 366 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_019106448.1 | transcriptional corepressor LEUNIG_HOMOLOG isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R1F4 | LisH domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_117780 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology