Basic Information
Locus ID:
BVRB_7g166270
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 27038181 | 27049855 | - | BVRB_7g166270 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 58,852.31 Da | 40.12 | 87.99 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 218 | 512 | 7.22492E-51 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 475 | 512 | 4.5E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 306 | 335 | 0.18 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 217 | 253 | 3.4E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 433 | 470 | 0.0098 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 212 | 512 | 1.69E-62 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 210 | 513 | 1.4E-65 | IPR015943 |
| SMART | SM00320 | WD40_4 | 473 | 513 | 3.4E-10 | IPR001680 |
| SMART | SM00668 | ctlh | 52 | 109 | 3.5E-4 | IPR006595 |
| SMART | SM00320 | WD40_4 | 386 | 424 | 2.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 214 | 253 | 1.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 428 | 470 | 1.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 301 | 342 | 0.024 | IPR001680 |
| SMART | SM00320 | WD40_4 | 259 | 298 | 1.2E-4 | IPR001680 |
| SMART | SM00667 | Lish | 19 | 51 | 0.0087 | IPR006594 |
| SMART | SM00320 | WD40_4 | 344 | 384 | 5.5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 480 | 512 | 14.251289 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 19 | 51 | 9.070868 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 480 | 512 | 11.787407 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 221 | 254 | 9.862871 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 266 | 302 | 12.379869 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 52 | 109 | 9.624961 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 266 | 302 | 10.311051 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 221 | 254 | 11.811761 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43920.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_010684801.2 | WD repeat-containing protein WDS homolog [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FND4 | WD repeat-containing protein WDS homolog OS=Arabidopsis thaliana OX=3702 GN=WDS PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R6N3 | WD repeat-containing protein 26-like OS=Spinacia oleracea OX=3562 GN=SOVF_100250 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology