Basic Information
Locus ID:
BVRB_7g165990
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Short Name:
ABCC5
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 26001023 | 26012569 | - | BVRB_7g165990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.92 | 168,705.86 Da | 39.30 | 107.99 | 0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 952 | 1246 | 1.18064E-93 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1269 | 1489 | 1.36788E-124 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 315 | 602 | 5.77022E-107 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 628 | 828 | 2.46806E-103 | - |
| Pfam | PF00005 | ABC transporter | 647 | 780 | 6.9E-18 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 954 | 1196 | 1.4E-27 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1288 | 1436 | 5.7E-29 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 318 | 582 | 2.9E-30 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 296 | 606 | 2.22E-41 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 951 | 1254 | 8.24E-52 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 623 | 849 | 4.6E-54 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1263 | 1500 | 4.19E-65 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 285 | 607 | 4.9E-58 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1255 | 1506 | 1.2E-79 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 913 | 1252 | 5.0E-62 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 608 | 869 | 3.9E-74 | IPR027417 |
| SMART | SM00382 | AAA_5 | 1297 | 1482 | 1.3E-14 | IPR003593 |
| SMART | SM00382 | AAA_5 | 655 | 836 | 2.2E-13 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 317 | 594 | 39.227783 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1271 | 1505 | 17.57383 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 628 | 851 | 23.055994 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 954 | 1224 | 36.430824 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 753 | 767 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 903 | 926 | - | - |
| Coils | Coil | Coil | 906 | 930 | - | - |
| Coils | Coil | Coil | 475 | 495 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04120.1 | multidrug resistance-associated protein 5. encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C. | 0 |
| RefSeq | XP_010684771.2 | ABC transporter C family member 5 [Beta vulgaris subsp. vulgaris] | 0 |
| Q7GB25 | ABC transporter C family member 5 OS=Arabidopsis thaliana OX=3702 GN=ABCC5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803M957 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology