Basic Information
Locus ID:
BVRB_7g164090
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
Autophagy-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 17616327 | 17631041 | + | BVRB_7g164090 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.61 | 49,259.95 Da | 52.67 | 74.60 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 311 | 341 | 0.012 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 96 | 353 | 3.33E-31 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 97 | 420 | 3.7E-21 | IPR015943 |
| SMART | SM00320 | WD40_4 | 258 | 298 | 0.038 | IPR001680 |
| SMART | SM00320 | WD40_4 | 87 | 123 | 240.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 301 | 342 | 0.033 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 70 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 65 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_010684410.1 | autophagy-related protein 18a [Beta vulgaris subsp. vulgaris] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A803L9Q8 | Autophagy-related protein 18a-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology