Basic Information
Locus ID:
BVRB_7g162630
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 10798356 | 10819858 | + | BVRB_7g162630 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.98 | 96,691.33 Da | 35.72 | 78.16 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16135 | Tify domain binding domain | 458 | 508 | 1.8E-13 | IPR032308 |
| Pfam | PF00628 | PHD-finger | 524 | 565 | 3.8E-7 | IPR019787 |
| Pfam | PF16135 | Tify domain binding domain | 262 | 317 | 2.0E-12 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 519 | 567 | 2.67E-13 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 595 | 651 | 7.97E-6 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 755 | 841 | 1.02E-6 | IPR016181 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 591 | 656 | 3.1E-9 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 517 | 575 | 1.3E-15 | IPR013083 |
| SMART | SM00249 | PHD_3 | 597 | 654 | 0.0031 | IPR001965 |
| SMART | SM00249 | PHD_3 | 524 | 565 | 5.4E-11 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 522 | 567 | 10.050699 | IPR019787 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 595 | 656 | 8.5021 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 525 | 564 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 40 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 128 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 75 | 128 | - | - |
| Coils | Coil | Coil | 69 | 97 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37520.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_010684185.1 | - | 0 |
| TrEMBL | A0A0K9RIM7 | Increased DNA methylation 1 OS=Spinacia oleracea OX=3562 GN=SOVF_067560 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology