Basic Information
Locus ID:
BVRB_7g158630
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 2687987 | 2689951 | + | BVRB_7g158630 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.08 | 62,286.76 Da | 51.19 | 74.73 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 241 | 265 | 0.17 | IPR002885 |
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 445 | 533 | 2.0E-32 | IPR032867 |
| Pfam | PF01535 | PPR repeat | 268 | 297 | 5.6E-6 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 319 | 403 | 9.6E-7 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 191 | 318 | 1.6E-20 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 238 | 265 | 0.0026 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 268 | 300 | 5.6E-6 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 265 | 299 | 11.640958 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 138 | 166 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 126 | 166 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G15690.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_010683636.2 | - | 0 |
| Q9ZQE5 | Pentatricopeptide repeat-containing protein At2g15690, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H66 PE=1 SV=2 | 0 | |
| TrEMBL | A0A7C9E665 | DYW_deaminase domain-containing protein OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology