Basic Information
Locus ID:
BVRB_6g152780
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 57339870 | 57386369 | - | BVRB_6g152780 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 160,644.45 Da | 35.19 | 75.22 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10320 | RGL4_N | 39 | 322 | 2.96364E-65 | - |
| CDD | cd10316 | RGL4_M | 1120 | 1205 | 2.84298E-26 | IPR029413 |
| CDD | cd10317 | RGL4_C | 473 | 654 | 1.96528E-41 | - |
| CDD | cd10316 | RGL4_M | 362 | 461 | 2.50549E-26 | IPR029413 |
| CDD | cd10320 | RGL4_N | 678 | 891 | 6.67547E-43 | - |
| CDD | cd10316 | RGL4_M | 922 | 1018 | 1.26637E-30 | IPR029413 |
| CDD | cd10317 | RGL4_C | 1218 | 1404 | 1.35657E-43 | - |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 747 | 793 | 1.4E-13 | IPR010325 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 946 | 1016 | 5.0E-23 | IPR029413 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 1133 | 1203 | 5.0E-23 | IPR029413 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 1029 | 1106 | 9.2E-16 | IPR029411 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 471 | 654 | 2.2E-46 | IPR029411 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 1216 | 1403 | 6.9E-49 | IPR029411 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 386 | 457 | 3.6E-18 | IPR029413 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 36 | 231 | 3.0E-71 | IPR010325 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 682 | 743 | 1.3E-13 | IPR010325 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 920 | 1017 | 8.04E-10 | IPR013784 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 1132 | 1204 | 4.51E-9 | IPR013784 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 1214 | 1404 | 2.83E-42 | IPR008979 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 468 | 653 | 4.0E-40 | IPR008979 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 403 | 459 | 3.92E-5 | IPR013784 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 1027 | 1103 | 1.11E-10 | IPR008979 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 37 | 322 | 5.96E-7 | IPR011013 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 683 | 886 | 2.54E-6 | IPR011013 |
| Gene3D | G3DSA:2.70.98.10 | - | 728 | 894 | 1.1E-6 | IPR014718 |
| Gene3D | G3DSA:2.60.120.260 | - | 1213 | 1404 | 1.9E-15 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 34 | 327 | 5.8E-11 | IPR014718 |
| Gene3D | G3DSA:2.60.40.1120 | - | 919 | 1016 | 3.3E-9 | - |
| Gene3D | G3DSA:2.60.40.1120 | - | 1131 | 1203 | 3.2E-8 | - |
| Gene3D | G3DSA:2.60.120.260 | - | 469 | 650 | 4.5E-16 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22620.1 | Rhamnogalacturonate lyase family protein. | 0 |
| RefSeq | XP_019106050.2 | probable rhamnogalacturonate lyase B isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| A5ABH4 | Probable rhamnogalacturonate lyase B OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 GN=rglB PE=3 SV=1 | 0 | |
| TrEMBL | A0A4D6LQR7 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology