Basic Information
Locus ID:
BVRB_6g152100
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Short Name:
AFB3
Description:
transport inhibitor response
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 56523555 | 56527454 | + | BVRB_6g152100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.72 | 64,216.97 Da | 41.88 | 99.72 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 62 | 108 | 1.3E-25 | IPR041101 |
| Pfam | PF13516 | Leucine Rich repeat | 150 | 166 | 1.2 | IPR001611 |
| Pfam | PF18511 | F-box | 3 | 42 | 1.2E-16 | IPR041567 |
| SUPERFAMILY | SSF81383 | F-box domain | 1 | 36 | 2.75E-5 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 25 | 545 | 3.14E-35 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 42 | 574 | 3.3E-178 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 41 | 6.7E-17 | - |
| SMART | SM00256 | fbox_2 | 5 | 46 | 1.2E-4 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 125 | 150 | 30.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 310 | 333 | 41.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 284 | 309 | 220.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 476 | 501 | 580.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 100 | 124 | 1.7 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 367 | 391 | 1.1 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 427 | 450 | 310.0 | IPR006553 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 48 | 8.543671 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26810.1 | auxin signaling F-box 2. | 0 |
| RefSeq | XP_010682986.2 | protein AUXIN SIGNALING F-BOX 2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LW29 | Protein AUXIN SIGNALING F-BOX 2 OS=Arabidopsis thaliana OX=3702 GN=AFB2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R4P9 | F-box domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_107140 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology