Basic Information
Locus ID:
BVRB_6g151880
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
Lysosomal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 56346892 | 56364562 | + | BVRB_6g151880 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 114,614.29 Da | 32.00 | 81.57 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 38 | 314 | 0.0 | - |
| Pfam | PF09261 | Alpha mannosidase middle domain | 357 | 448 | 1.9E-21 | IPR015341 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 602 | 815 | 6.2E-50 | IPR011682 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 39 | 351 | 1.2E-94 | IPR000602 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 898 | 1004 | 5.0E-10 | IPR041147 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 27 | 352 | 2.89E-107 | IPR011330 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 458 | 1008 | 1.04E-138 | IPR011013 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 356 | 454 | 3.27E-28 | IPR028995 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 320 | 398 | 9.9E-31 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1180 | - | 466 | 576 | 3.0E-28 | IPR013780 |
| Gene3D | G3DSA:2.70.98.30 | - | 598 | 864 | 2.4E-95 | - |
| Gene3D | G3DSA:2.60.40.1360 | - | 884 | 1014 | 1.6E-33 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 399 | 454 | 1.2E-22 | IPR037094 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 38 | 319 | 4.2E-121 | IPR027291 |
| SMART | SM00872 | Alpha_mann_mid_2 | 356 | 430 | 5.8E-23 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13980.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_010682967.2 | alpha-mannosidase At3g26720 isoform X2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8LPJ3 | Probable alpha-mannosidase At5g13980 OS=Arabidopsis thaliana OX=3702 GN=At5g13980 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RLN6 | Alpha-mannosidase OS=Spinacia oleracea OX=3562 GN=SOVF_052620 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology