Basic Information
Locus ID:
BVRB_6g151860
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
Lysosomal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 56289112 | 56304839 | + | BVRB_6g151860 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 113,686.18 Da | 34.66 | 84.86 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 39 | 314 | 0.0 | - |
| Pfam | PF09261 | Alpha mannosidase middle domain | 356 | 447 | 7.2E-20 | IPR015341 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 598 | 812 | 1.2E-47 | IPR011682 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 40 | 351 | 7.5E-95 | IPR000602 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 894 | 1000 | 3.0E-10 | IPR041147 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 28 | 352 | 1.45E-111 | IPR011330 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 355 | 451 | 2.62E-28 | IPR028995 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 457 | 1004 | 3.3E-141 | IPR011013 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 398 | 454 | 7.1E-20 | IPR037094 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 39 | 319 | 3.8E-123 | IPR027291 |
| Gene3D | G3DSA:2.60.40.1360 | - | 881 | 1009 | 1.3E-37 | - |
| Gene3D | G3DSA:2.70.98.30 | - | 593 | 860 | 2.9E-93 | - |
| Gene3D | G3DSA:2.60.40.1180 | - | 461 | 571 | 1.5E-25 | IPR013780 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 320 | 397 | 1.0E-30 | IPR037094 |
| SMART | SM00872 | Alpha_mann_mid_2 | 356 | 430 | 5.4E-20 | IPR015341 |
| Coils | Coil | Coil | 941 | 961 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26720.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_010682958.2 | alpha-mannosidase At3g26720 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| P94078 | Alpha-mannosidase At3g26720 OS=Arabidopsis thaliana OX=3702 GN=At3g26720 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803MZI9 | Alpha-mannosidase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology