Basic Information
Locus ID:
BVRB_6g151840
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
Lysosomal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 56240370 | 56255724 | + | BVRB_6g151840 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.30 | 74,635.81 Da | 33.19 | 80.02 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 432 | 646 | 9.0E-45 | IPR011682 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 191 | 281 | 2.4E-19 | IPR015341 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 3 | 185 | 3.4E-39 | IPR000602 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 291 | 657 | 9.1E-98 | IPR011013 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 190 | 291 | 2.06E-27 | IPR028995 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 3 | 186 | 9.64E-49 | IPR011330 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 1 | 153 | 1.2E-49 | IPR027291 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 232 | 288 | 4.2E-20 | IPR037094 |
| Gene3D | G3DSA:2.70.98.30 | - | 427 | 668 | 1.6E-83 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 154 | 231 | 1.4E-29 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1180 | - | 295 | 405 | 1.5E-23 | IPR013780 |
| SMART | SM00872 | Alpha_mann_mid_2 | 190 | 264 | 1.8E-18 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26720.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_010682958.2 | alpha-mannosidase At3g26720 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| P94078 | Alpha-mannosidase At3g26720 OS=Arabidopsis thaliana OX=3702 GN=At3g26720 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803MZI9 | Alpha-mannosidase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology