Basic Information
Locus ID:
BVRB_6g149110
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
Hippocampus abundant transcript-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 52389961 | 52397659 | - | BVRB_6g149110 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.78 | 80,983.24 Da | 34.07 | 116.58 | 0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17330 | MFS_SLC46_TetA_like | 350 | 701 | 2.09346E-42 | - |
| Pfam | PF07690 | Major Facilitator Superfamily | 351 | 662 | 1.7E-18 | IPR011701 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 350 | 706 | 4.32E-29 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 310 | 704 | 8.6E-31 | IPR036259 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 646 | 669 | 8.6E-8 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 586 | 607 | 8.6E-8 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 430 | 451 | 8.6E-8 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 345 | 361 | 8.6E-8 | IPR001958 |
| Coils | Coil | Coil | 7 | 27 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42210.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_010682914.1 | hippocampus abundant transcript-like protein 1 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q96MC6 | Hippocampus abundant transcript 1 protein OS=Homo sapiens OX=9606 GN=MFSD14A PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9Q9U2 | MFS domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_203210 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology