Basic Information
Locus ID:
BVRB_6g148930
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
Radical SAM superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 52157572 | 52163169 | + | BVRB_6g148930 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.51 | 50,965.37 Da | 45.82 | 93.62 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01335 | Radical_SAM | 204 | 404 | 1.73066E-7 | - |
| Pfam | PF04055 | Radical SAM superfamily | 200 | 367 | 7.8E-18 | IPR007197 |
| Pfam | PF13394 | 4Fe-4S single cluster domain | 204 | 309 | 1.9E-5 | - |
| SUPERFAMILY | SSF102114 | Radical SAM enzymes | 194 | 410 | 4.71E-18 | - |
| Gene3D | G3DSA:1.10.150.530 | - | 93 | 156 | 3.5E-5 | - |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 158 | 437 | 9.2E-109 | IPR013785 |
| TIGRFAM | TIGR00048 | rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase | 96 | 432 | 3.3E-101 | IPR027492 |
| ProSiteProfiles | PS51918 | Radical SAM core domain profile. | 191 | 424 | 30.827484 | IPR007197 |
| SFLD | SFLDF00275 | adenosine C2 methyltransferase (RlmN-like) | 91 | 433 | 0.0 | IPR004383 |
| SFLD | SFLDG01062 | methyltransferase (Class A) | 91 | 433 | 0.0 | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60230.1 | Radical SAM superfamily protein. | 0 |
| RefSeq | XP_010682563.2 | dual-specificity RNA methyltransferase RlmN isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q74E53 | Dual-specificity RNA methyltransferase RlmN OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) OX=243231 GN=rlmN PE=3 SV=1 | 0 | |
| TrEMBL | A0A0K9RZM4 | Radical SAM core domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_011030 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18137 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g148930 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg42937, Sbi_jg45549 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11395 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00002405 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl35362, Sgl40716 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000002988, gene:ENSEOMG00000010827 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0005430, CQ.Regalona.r1.6BG0005680 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30030230, pistato.v30222470 |
| Arecaceae | Cocos nucifera | 1 | scaffold005896G000030 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103723381 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_05.713.V1.1, AsparagusV1_05.714.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri5G18276 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G60230.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10023456m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g04450.v2.2, SpUn0106_0020.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g020090.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0806 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0860 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g07770 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0139s00017.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g03140 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.1030, evm.TU.LG05.498 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00034350 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G00243, Lb4G26269 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.2479, BH02.2584, CH02.2808 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0026040, gene-QOZ80_1BG0076480 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0274850.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_054088 |
| Poaceae | Oryza coarctata | 2 | Oco01G015550, Oco02G015860 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g45370.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G208600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0604916, Pt_Chr0605214 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr03G012000, Chr05G019260, Chr08G012210 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G393600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG034520, gene_TRIDC3BG038910 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G230400.2, TraesCS3B02G259700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb359210_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-29123 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g8302 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG13.220 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g05150 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_15_RagTag.742 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-26917 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10218 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15652 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000001l.400 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002466 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11263 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17769 |
| Salicaceae | Populus euphratica | 2 | populus_peu16499, populus_peu16500 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132641348 |
| Solanaceae | Solanum chilense | 1 | SOLCI002489500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107020776 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1592 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G1182 |
| Zosteraceae | Zostera marina | 2 | Zosma03g03490.v3.1, Zosma07g03450.v3.1 |