Basic Information
Locus ID:
BVRB_6g142570
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 28873166 | 28884904 | + | BVRB_6g142570 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 138,912.41 Da | 52.53 | 77.23 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 310 | 438 | 2.68107E-19 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1124 | 1167 | 2.10618E-16 | - |
| CDD | cd12108 | Hr-like | 51 | 177 | 1.52745E-32 | - |
| CDD | cd12108 | Hr-like | 657 | 813 | 4.55277E-29 | - |
| Pfam | PF05495 | CHY zinc finger | 996 | 1071 | 1.7E-16 | IPR008913 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 653 | 814 | 1.2E-8 | IPR012312 |
| Pfam | PF14599 | Zinc-ribbon | 1172 | 1229 | 5.6E-24 | IPR039512 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 309 | 440 | 6.3E-6 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 53 | 179 | 8.9E-13 | IPR012312 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1062 | 1117 | 3.66E-15 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 987 | 1052 | 1.83E-17 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1124 | 1170 | 1.26E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1120 | 1169 | 3.4E-9 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 649 | 884 | 5.0E-27 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 46 | 197 | 6.3E-34 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 1196 | 1237 | 1.0E-17 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 310 | 456 | 2.0E-18 | - |
| SMART | SM00184 | ring_2 | 1125 | 1166 | 7.7E-6 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1061 | 1124 | 29.178875 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 989 | 1058 | 25.206245 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1125 | 1167 | 11.176261 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 565 | 582 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 556 | 582 | - | - |
| Coils | Coil | Coil | 400 | 420 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_010681649.2 | zinc finger protein BRUTUS isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QUB5 | Zinc finger protein BRUTUS OS=Spinacia oleracea OX=3562 GN=SOVF_140190 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology