Basic Information
Locus ID:
BVRB_6g142060
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 26924896 | 26943173 | + | BVRB_6g142060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.29 | 41,841.01 Da | 53.31 | 85.66 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 4 | 77 | 7.88587E-28 | - |
| Pfam | PF00627 | UBA/TS-N domain | 352 | 385 | 1.9E-9 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 217 | 252 | 1.3E-10 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 6 | 79 | 3.0E-18 | IPR000626 |
| Pfam | PF09280 | XPC-binding domain | 269 | 324 | 1.2E-21 | IPR015360 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 266 | 331 | 2.75E-20 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 332 | 391 | 1.02E-11 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 4 | 79 | 8.52E-20 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 211 | 256 | 4.51E-8 | IPR009060 |
| Gene3D | G3DSA:3.10.20.90 | - | 2 | 82 | 9.0E-26 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 342 | 389 | 5.1E-22 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 207 | 256 | 3.0E-16 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 260 | 325 | 3.3E-25 | IPR036353 |
| SMART | SM00165 | uba_6 | 350 | 387 | 6.6E-5 | IPR015940 |
| SMART | SM00213 | ubq_7 | 4 | 78 | 2.0E-18 | IPR000626 |
| SMART | SM00165 | uba_6 | 214 | 254 | 0.0061 | IPR015940 |
| SMART | SM00727 | CBM | 267 | 310 | 1.5E-6 | IPR006636 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 4 | 82 | 18.671614 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 212 | 255 | 11.727592 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 347 | 388 | 13.101127 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 361 | 375 | 8.8E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 295 | 317 | 8.8E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 376 | 391 | 8.8E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 344 | 360 | 8.8E-31 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 86 | 174 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 86 | 128 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.3 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_048503245.1 | - | 0 |
| Q84L31 | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2 | 0 | |
| TrEMBL | A0A1S2XZV3 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology