Basic Information
Locus ID:
BVRB_6g141580
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
lysM domain receptor-like kinase 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 24983524 | 24985868 | - | BVRB_6g141580 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.14 | 76,769.19 Da | 44.18 | 82.69 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 200 | 237 | 1.57252E-4 | IPR018392 |
| Pfam | PF01476 | LysM domain | 201 | 244 | 1.4E-4 | IPR018392 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 397 | 665 | 9.6E-38 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 359 | 662 | 2.7E-61 | IPR011009 |
| SUPERFAMILY | SSF54106 | LysM domain | 199 | 244 | 3.92E-5 | IPR036779 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 199 | 253 | 1.7E-8 | IPR036779 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 451 | 680 | 3.1E-50 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 359 | 449 | 3.8E-14 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 374 | 670 | 30.350658 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 199 | 243 | 9.762865 | IPR018392 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 252 | 276 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33580.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_010681495.2 | protein LYK5 [Beta vulgaris subsp. vulgaris] | 0 |
| O22808 | Protein LYK5 OS=Arabidopsis thaliana OX=3702 GN=LYK5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0J8BEJ4 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology