Basic Information
Locus ID:
BVRB_6g140900
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
Hippocampus abundant transcript-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 22620736 | 22630237 | + | BVRB_6g140900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.01 | 48,066.05 Da | 50.71 | 115.41 | 0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17330 | MFS_SLC46_TetA_like | 16 | 411 | 8.27342E-56 | - |
| Pfam | PF07690 | Major Facilitator Superfamily | 53 | 372 | 6.3E-24 | IPR011701 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 52 | 413 | 2.09E-37 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 9 | 412 | 1.9E-37 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 1 | 418 | 11.207346 | IPR020846 |
| ProSitePatterns | PS00216 | Sugar transport proteins signature 1. | 68 | 84 | - | IPR005829 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 356 | 379 | 1.8E-5 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 296 | 317 | 1.8E-5 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 50 | 69 | 1.8E-5 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 81 | 105 | 1.8E-5 | IPR001958 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42210.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_010681370.2 | hippocampus abundant transcript-like protein 1 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A0K9R9Y7 | MFS domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_090120 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology