Basic Information
Locus ID:
BVRB_6g138060
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
DA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 14402948 | 14415213 | - | BVRB_6g138060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 57,333.70 Da | 58.35 | 63.78 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 136 | 188 | 6.62764E-26 | - |
| Pfam | PF00412 | LIM domain | 136 | 191 | 6.9E-9 | IPR001781 |
| Pfam | PF12315 | Protein DA1 | 285 | 503 | 1.0E-104 | IPR022087 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 128 | 161 | 7.14E-8 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 162 | 217 | 1.61E-7 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 131 | 210 | 1.7E-14 | - |
| SMART | SM00726 | uim | 45 | 64 | 0.049 | IPR003903 |
| SMART | SM00132 | lim_4 | 135 | 187 | 2.0E-12 | IPR001781 |
| SMART | SM00726 | uim | 83 | 102 | 10.0 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 83 | 102 | 8.830677 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 134 | 194 | 11.9395 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 45 | 64 | 10.146433 | IPR003903 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 136 | 170 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 77 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 424 | 454 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 48 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 424 | 451 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_010680936.1 | protein DA1-related 1 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A0K9RQ70 | LIM zinc-binding domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_041660 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology