Basic Information
Locus ID:
BVRB_6g138010
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Short Name:
LYK4
Description:
lysM domain receptor-like kinase 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 14344448 | 14347742 | + | BVRB_6g138010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.31 | 68,301.84 Da | 39.22 | 87.61 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01476 | LysM domain | 159 | 202 | 3.1E-5 | IPR018392 |
| Pfam | PF00069 | Protein kinase domain | 344 | 598 | 5.4E-39 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 312 | 599 | 6.04E-64 | IPR011009 |
| SUPERFAMILY | SSF54106 | LysM domain | 156 | 202 | 2.35E-5 | IPR036779 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 401 | 609 | 1.6E-52 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 307 | 399 | 2.4E-15 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 156 | 212 | 4.8E-7 | IPR036779 |
| SMART | SM00257 | LysM_2 | 157 | 202 | 0.0045 | IPR018392 |
| SMART | SM00220 | serkin_6 | 309 | 605 | 1.3E-27 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 156 | 201 | 11.619986 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 309 | 604 | 33.43187 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 221 | 240 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 221 | 236 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23770.1 | protein kinase family protein / peptidoglycan-binding LysM domain-containing protein. | 0 |
| RefSeq | XP_048503118.1 | - | 0 |
| O64825 | LysM domain receptor-like kinase 4 OS=Arabidopsis thaliana OX=3702 GN=LYK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803L839 | LysM domain receptor-like kinase 4 OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology