Basic Information
Locus ID:
BVRB_6g137930
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 14160275 | 14161575 | + | BVRB_6g137930 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.65 | 25,842.76 Da | 52.81 | 51.91 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 31 | 75 | 3.22424E-30 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 31 | 78 | 2.4E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 29 | 86 | 5.83E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 88 | 9.0E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 33 | 73 | 1.3E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 33 | 74 | 13.300693 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 48 | 57 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 118 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23780.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010680923.1 | E3 ubiquitin-protein ligase RNF185 [Beta vulgaris subsp. vulgaris] | 0 |
| Q09463 | E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QVW5 | RING-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_142590 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology