Basic Information
Locus ID:
BVRB_6g137460
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 13269497 | 13270825 | + | BVRB_6g137460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.43 | 37,296.91 Da | 48.59 | 97.23 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 280 | 322 | 2.1E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 274 | 328 | 3.98E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 247 | 328 | 2.4E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 281 | 321 | 4.0E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 281 | 322 | 11.899158 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G20910.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_042483481.1 | - | 0 |
| Q8RXD3 | E3 ubiquitin-protein ligase AIP2 OS=Arabidopsis thaliana OX=3702 GN=AIP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251P5I1 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g137460 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl34756, Sgl40127 |