Basic Information
Locus ID:
BVRB_6g132130
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 5787769 | 5797145 | - | BVRB_6g132130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 64,887.01 Da | 57.31 | 91.13 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 266 | 558 | 1.26458E-54 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 351 | 388 | 0.0026 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 265 | 300 | 3.3E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 477 | 515 | 0.037 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 520 | 558 | 4.7E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 312 | 346 | 0.0016 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 260 | 558 | 1.65E-66 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 259 | 522 | 6.1E-61 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 523 | 578 | 3.5E-10 | IPR015943 |
| SMART | SM00320 | WD40_4 | 474 | 516 | 0.088 | IPR001680 |
| SMART | SM00668 | ctlh | 97 | 154 | 3.6E-4 | IPR006595 |
| SMART | SM00320 | WD40_4 | 349 | 388 | 2.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 519 | 559 | 9.1E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 390 | 430 | 170.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 431 | 470 | 77.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 262 | 301 | 3.7E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 307 | 346 | 4.4E-7 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 314 | 347 | 10.943775 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 526 | 561 | 11.233774 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 363 | 390 | 9.572741 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 269 | 302 | 12.847725 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 97 | 154 | 9.635209 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 269 | 302 | 10.68014 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 64 | 96 | 8.678185 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 314 | 355 | 14.117617 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 526 | 568 | 14.05078 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 288 | 302 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 375 | 389 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_010680145.1 | WD repeat-containing protein 26 homolog [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KWW7 | WD repeat-containing protein 26 OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology