Basic Information
Locus ID:
BVRB_6g130460
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
Lysosomal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 3964050 | 3974700 | - | BVRB_6g130460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 115,166.92 Da | 34.68 | 81.85 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 54 | 331 | 8.22356E-166 | - |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 618 | 828 | 1.6E-48 | IPR011682 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 911 | 1019 | 4.1E-12 | IPR041147 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 55 | 367 | 3.4E-90 | IPR000602 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 372 | 464 | 3.0E-19 | IPR015341 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 475 | 1022 | 2.2E-142 | IPR011013 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 371 | 466 | 3.2E-27 | IPR028995 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 43 | 369 | 8.89E-105 | IPR011330 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 414 | 469 | 8.1E-21 | IPR037094 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 336 | 413 | 6.1E-30 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1360 | - | 897 | 1022 | 1.0E-35 | - |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 54 | 335 | 1.1E-114 | IPR027291 |
| Gene3D | G3DSA:2.70.98.30 | - | 615 | 877 | 7.3E-92 | - |
| Gene3D | G3DSA:2.60.40.1180 | - | 482 | 593 | 6.8E-24 | IPR013780 |
| SMART | SM00872 | Alpha_mann_mid_2 | 372 | 446 | 1.7E-19 | IPR015341 |
| Coils | Coil | Coil | 958 | 978 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66150.2 | - | 0 |
| RefSeq | XP_010679911.2 | alpha-mannosidase isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FKW9 | Probable alpha-mannosidase At5g66150 OS=Arabidopsis thaliana OX=3702 GN=At5g66150 PE=3 SV=1 | 0 | |
| TrEMBL | A0A0K9QHW5 | Alpha-mannosidase OS=Spinacia oleracea OX=3562 GN=SOVF_177470 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology