Basic Information
Locus ID:
BVRB_6g127200
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 69276 | 129370 | + | BVRB_6g127200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 459,241.09 Da | 45.79 | 89.25 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 2646 | 2750 | 1.49031E-4 | - |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 139 | 381 | 8.8E-68 | IPR031646 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2001 | 2167 | 1.2E-11 | IPR009291 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 115 | 4.1E-31 | IPR026854 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 576 | 801 | 1.6E-30 | IPR031642 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3154 | 3445 | 8.0E-15 | IPR009543 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2247 | 2391 | 5.7E-10 | IPR009291 |
| Pfam | PF16909 | Vacuolar-sorting-associated 13 protein C-terminal | 3696 | 3799 | 1.2E-8 | IPR031645 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 2635 | 2751 | 5.01E-5 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 2628 | 2793 | 3.0E-5 | IPR035892 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 2621 | 2770 | 9.136286 | IPR000008 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2209 | 2229 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 3516 | 3537 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1644 | 1670 | - | - |
| Coils | Coil | Coil | 2550 | 2570 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48090.4 | - | 0 |
| RefSeq | XP_010679514.1 | uncharacterized protein LOC104894866 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| A1Z713 | Intermembrane lipid transfer protein Vps13 OS=Drosophila melanogaster OX=7227 GN=Vps13 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803KY05 | C2 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology