Basic Information
Locus ID:
BVRB_5g121890
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
PAPA-1-like family protein zinc finger (HIT type) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 51696208 | 51701532 | - | BVRB_5g121890 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.62 | 63,732.40 Da | 60.75 | 53.18 | -1.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04795 | PAPA-1-like conserved region | 434 | 518 | 1.5E-19 | IPR006880 |
| Pfam | PF04438 | HIT zinc finger | 534 | 565 | 1.5E-7 | IPR007529 |
| SMART | SM01406 | PAPA_1_2 | 433 | 518 | 3.8E-27 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 303 | 320 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 364 | 391 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 339 | 353 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 231 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 426 | 473 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 303 | 485 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 222 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 289 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 82 | - | - |
| Coils | Coil | Coil | 425 | 459 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47350.1 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | XP_010679394.1 | uncharacterized protein LOC104894776 isoform X2 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A0K9RW66 | PAPA-1 domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_027370 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology