Basic Information
Locus ID:
BVRB_5g119720
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Short Name:
ATMRK1
Description:
serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 49314967 | 49317785 | - | BVRB_5g119720 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 26,360.98 Da | 37.24 | 60.90 | -1.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 150 | 215 | 2.12345E-23 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 150 | 218 | 2.2E-22 | IPR009071 |
| SUPERFAMILY | SSF47095 | HMG-box | 136 | 219 | 1.83E-27 | IPR036910 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 77 | 133 | 4.6E-6 | - |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 134 | 230 | 6.7E-29 | IPR036910 |
| SMART | SM00398 | hmgende2 | 149 | 219 | 5.7E-28 | IPR009071 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 150 | 218 | 19.372913 | IPR009071 |
| PRINTS | PR00886 | High mobility group (HMG1/HMG2) protein signature | 202 | 222 | 2.0E-7 | - |
| PRINTS | PR00886 | High mobility group (HMG1/HMG2) protein signature | 183 | 202 | 2.0E-7 | - |
| PRINTS | PR00886 | High mobility group (HMG1/HMG2) protein signature | 165 | 183 | 2.0E-7 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 115 | 155 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 116 | 139 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 38 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G28730.1 | high mobility group. encodes a component of the FAcilitates Chromatin Transcription (FACT) complex, SSRP1. Along with STP16 binds to the promoter of FLC. | 0 |
| RefSeq | XP_048499941.1 | FACT complex subunit SSRP1-like [Beta vulgaris subsp. vulgaris] | 0 |
| O04235 | FACT complex subunit SSRP1 OS=Vicia faba OX=3906 GN=SSRP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8J4QT59 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology