Basic Information
Locus ID:
BVRB_5g119640
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 49214672 | 49216412 | - | BVRB_5g119640 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.92 | 59,047.56 Da | 52.32 | 64.40 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 275 | 318 | 2.6E-8 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 192 | 254 | 1.2E-14 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 193 | 261 | 2.47E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 119 | 201 | 1.93E-14 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 273 | 321 | 1.37E-16 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 250 | 506 | 3.9E-77 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 118 | 207 | 5.3E-14 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 192 | 254 | 8.5E-20 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 258 | 328 | 0.61 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 119 | 332 | 45.315742 | IPR044066 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 241 | 254 | 8.614303 | IPR001878 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 123 | 169 | 8.683004 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05890.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010679272.2 | probable E3 ubiquitin-protein ligase ARI5 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8L829 | Probable E3 ubiquitin-protein ligase ARI5 OS=Arabidopsis thaliana OX=3702 GN=ARI5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RW54 | RBR-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_022340 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology