Basic Information
Locus ID:
BVRB_5g119360
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 48908887 | 48921750 | + | BVRB_5g119360 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.47 | 171,229.63 Da | 42.72 | 69.26 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04301 | NAT_SF | 1113 | 1173 | 0.00108464 | - |
| CDD | cd15539 | PHD1_AIRE | 917 | 956 | 9.61536E-17 | - |
| Pfam | PF16135 | Tify domain binding domain | 839 | 888 | 2.3E-19 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 903 | 958 | 3.1E-14 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 1104 | 1195 | 7.68E-7 | IPR016181 |
| Gene3D | G3DSA:3.40.630.30 | - | 1092 | 1207 | 8.1E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 905 | 974 | 3.7E-18 | IPR013083 |
| SMART | SM00384 | AT_hook_2 | 388 | 400 | 1.9 | IPR017956 |
| SMART | SM00249 | PHD_3 | 916 | 957 | 2.7E-10 | IPR001965 |
| SMART | SM00384 | AT_hook_2 | 524 | 536 | 28.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 433 | 445 | 29.0 | IPR017956 |
| ProSiteProfiles | PS51186 | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 1054 | 1213 | 11.01956 | IPR000182 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 914 | 959 | 10.006199 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 917 | 956 | - | IPR019786 |
| PRINTS | PR00929 | AT-hook-like domain signature | 388 | 398 | 9.6E-5 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 522 | 532 | 9.6E-5 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 431 | 442 | 9.6E-5 | IPR017956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 221 | 248 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 531 | 554 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 511 | 554 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 396 | 433 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1384 | 1432 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1235 | 1258 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 106 | 125 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1384 | 1445 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1282 | 1302 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 734 | 758 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 221 | 236 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 370 | 486 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 725 | 780 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 452 | 469 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1276 | 1316 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G36740.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein. | 0 |
| RefSeq | XP_010679053.2 | uncharacterized protein LOC104894503 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803M2E6 | PHD-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology