Basic Information
Locus ID:
BVRB_5g117920
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
Belongs to the histone deacetylase family. HD Type 1 subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 47413541 | 47421373 | - | BVRB_5g117920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.69 | 50,549.20 Da | 51.11 | 75.82 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09991 | HDAC_classI | 28 | 346 | 0.0 | - |
| Pfam | PF00850 | Histone deacetylase domain | 42 | 344 | 6.9E-87 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 23 | 398 | 2.25E-125 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 13 | 412 | 1.6E-137 | IPR037138 |
| PIRSF | PIRSF037913 | HDAC_I_euk | 10 | 446 | 3.3E-205 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 281 | 291 | 1.5E-24 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 164 | 187 | 1.5E-24 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 196 | 211 | 1.5E-24 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 44 | 61 | 1.0E-31 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 183 | 199 | 1.0E-31 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 242 | 255 | 1.0E-31 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 259 | 277 | 1.0E-31 | IPR003084 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 425 | 450 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 403 | 450 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63110.1 | histone deacetylase 6. RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing. | 0 |
| RefSeq | XP_010678848.1 | histone deacetylase 6 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FML2 | Histone deacetylase 6 OS=Arabidopsis thaliana OX=3702 GN=HDA6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RE39 | Histone deacetylase OS=Spinacia oleracea OX=3562 GN=SOVF_077050 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology