Basic Information
Locus ID:
BVRB_5g117790
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 47347104 | 47349963 | - | BVRB_5g117790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.74 | 54,542.96 Da | 45.45 | 91.64 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08268 | F-box associated domain | 252 | 371 | 1.9E-4 | IPR013187 |
| Pfam | PF00646 | F-box domain | 15 | 53 | 1.5E-10 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 13 | 83 | 4.97E-16 | IPR036047 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 59 | 231 | 2.22E-5 | IPR011043 |
| Gene3D | G3DSA:1.20.1280.50 | - | 6 | 69 | 5.8E-10 | - |
| SMART | SM00256 | fbox_2 | 19 | 59 | 4.7E-10 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 128 | 352 | 3.5E-21 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 13 | 59 | 13.23318 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G51320.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_010678932.2 | F-box/kelch-repeat protein At3g06240 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A0K9R497 | F-box domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_113930 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 3 | Ah000544, Ah000545, Ah000548 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g117790 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017365 |
| Amaranthaceae | Suaeda glauca | 16 | Sgl02265, Sgl02998, Sgl03016, Sgl07416, Sgl08131, Sgl33489 ... |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000005978, gene:ENSEOMG00000020505 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.5AG0023440, CQ.Regalona.r1.5BG0024920 ... |