Basic Information
Locus ID:
BVRB_5g116650
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 45720853 | 45722701 | + | BVRB_5g116650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.09 | 44,988.37 Da | 56.46 | 79.58 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 141 | 184 | 1.54729E-19 | - |
| Pfam | PF13639 | Ring finger domain | 141 | 184 | 3.4E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 121 | 188 | 2.19E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 117 | 188 | 1.2E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 142 | 183 | 3.0E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 142 | 184 | 11.987676 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 260 | 289 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 260 | 276 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G23980.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010678730.2 | RING-H2 finger protein ATL47 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8GW38 | RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803L8Q5 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology