Basic Information
Locus ID:
BVRB_5g116640
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 45705733 | 45711467 | + | BVRB_5g116640 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.14 | 19,832.82 Da | 43.89 | 78.51 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 1 | 134 | 1.32603E-50 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 4 | 133 | 3.0E-39 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 5 | 141 | 5.92E-44 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 151 | 6.2E-47 | IPR016135 |
| SMART | SM00212 | ubc_7 | 1 | 139 | 8.4E-46 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 139 | 41.804935 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 64 | 80 | - | IPR023313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 144 | 175 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 148 | 163 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G41340.1 | ubiquitin conjugating enzyme 4. Belongs to Ubiquitin conjugating enzyme family. Gene expression is developmentally regulated. | 0 |
| RefSeq | XP_010678729.1 | - | 0 |
| P42748 | Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis thaliana OX=3702 GN=UBC4 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9QIW6 | UBC core domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_174190 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology