Basic Information
Locus ID:
BVRB_5g116050
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 44874591 | 44886548 | - | BVRB_5g116050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.20 | 148,251.30 Da | 37.45 | 104.43 | 0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 132 | 425 | 8.76335E-90 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1080 | 1300 | 2.09561E-117 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 451 | 653 | 1.49384E-113 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 764 | 1057 | 2.51375E-87 | IPR044726 |
| Pfam | PF00005 | ABC transporter | 471 | 605 | 2.8E-20 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 134 | 401 | 4.7E-25 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 764 | 1018 | 7.6E-28 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1099 | 1247 | 1.5E-30 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 763 | 1062 | 1.14E-50 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 449 | 677 | 6.23E-58 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 123 | 436 | 7.98E-30 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1075 | 1308 | 2.43E-63 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 121 | 433 | 1.2E-43 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 730 | 1063 | 9.0E-61 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 434 | 696 | 6.8E-75 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1064 | 1317 | 5.9E-76 | IPR027417 |
| SMART | SM00382 | AAA_5 | 480 | 653 | 4.6E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1108 | 1307 | 4.6E-12 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 765 | 1045 | 32.776333 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 131 | 417 | 28.15213 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 451 | 676 | 22.349049 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1082 | 1316 | 16.533419 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 578 | 592 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_010678665.2 | - | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KUU3 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology