Basic Information
Locus ID:
BVRB_5g116010
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 44805853 | 44816593 | + | BVRB_5g116010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 143,582.13 Da | 37.45 | 103.25 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 137 | 433 | 1.52103E-85 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1033 | 1253 | 2.5447E-119 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 459 | 661 | 2.61851E-109 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 783 | 1009 | 2.74613E-55 | IPR044726 |
| Pfam | PF00664 | ABC transporter transmembrane region | 875 | 966 | 8.2E-8 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 139 | 410 | 2.1E-22 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 479 | 613 | 3.9E-20 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1052 | 1200 | 9.5E-31 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 772 | 872 | 7.1E-10 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 464 | 685 | 1.02E-55 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 129 | 441 | 1.31E-29 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 770 | 1017 | 1.57E-37 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1027 | 1261 | 2.13E-65 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 700 | 874 | 1.8E-18 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 875 | 1016 | 2.5E-25 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1018 | 1271 | 4.2E-80 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 126 | 434 | 1.1E-40 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 435 | 699 | 9.6E-74 | IPR027417 |
| SMART | SM00382 | AAA_5 | 1061 | 1253 | 1.1E-11 | IPR003593 |
| SMART | SM00382 | AAA_5 | 488 | 661 | 4.7E-12 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1035 | 1269 | 17.773909 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 459 | 684 | 21.948891 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 136 | 425 | 28.496283 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 772 | 998 | 15.119932 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 586 | 600 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_048501256.1 | - | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KUU3 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology