Basic Information
Locus ID:
BVRB_5g115450
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
Zinc ion binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 43824462 | 43839076 | - | BVRB_5g115450 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 140,037.81 Da | 54.53 | 79.37 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 603 | 748 | 3.4189E-17 | - |
| CDD | cd12108 | Hr-like | 35 | 173 | 5.79978E-22 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1115 | 1157 | 2.55532E-19 | - |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 34 | 175 | 3.2E-8 | IPR012312 |
| Pfam | PF13639 | Ring finger domain | 1113 | 1156 | 1.1E-7 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 985 | 1060 | 1.4E-17 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 1162 | 1219 | 2.4E-20 | IPR039512 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1051 | 1108 | 1.57E-17 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1104 | 1161 | 5.65E-8 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 977 | 1041 | 2.09E-17 | IPR037274 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1108 | 1159 | 4.5E-10 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 31 | 192 | 1.2E-20 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 594 | 797 | 4.7E-16 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 1186 | 1221 | 1.7E-16 | - |
| SMART | SM00184 | ring_2 | 1115 | 1156 | 5.2E-5 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1050 | 1114 | 28.360722 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 978 | 1047 | 23.294727 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1115 | 1157 | 11.559839 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| Coils | Coil | Coil | 40 | 67 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18910.1 | zinc ion binding;zinc ion binding. | 0 |
| RefSeq | XP_010678609.1 | zinc finger protein BRUTUS-like At1g18910 [Beta vulgaris subsp. vulgaris] | 0 |
| F4IDY5 | Zinc finger protein BRUTUS-like At1g18910 OS=Arabidopsis thaliana OX=3702 GN=At1g18910 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RX52 | Zinc finger protein BRUTUS-like At1g18910 OS=Spinacia oleracea OX=3562 GN=SOVF_024830 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology