Basic Information
Locus ID:
BVRB_5g115000
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
Angio-associated migratory cell
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 43180654 | 43187748 | - | BVRB_5g115000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.45 | 43,622.56 Da | 51.40 | 81.83 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 111 | 399 | 8.63113E-58 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 362 | 399 | 9.3E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 329 | 357 | 0.0014 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 279 | 316 | 9.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 195 | 231 | 2.1E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 112 | 146 | 1.9E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 151 | 189 | 0.2 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 68 | 103 | 0.12 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 66 | 402 | 5.04E-72 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 64 | 402 | 3.6E-87 | IPR015943 |
| SMART | SM00320 | WD40_4 | 64 | 104 | 4.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 235 | 274 | 6.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 192 | 231 | 3.7E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 360 | 399 | 3.5E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 319 | 357 | 6.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 277 | 316 | 3.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 148 | 189 | 0.0069 | IPR001680 |
| SMART | SM00320 | WD40_4 | 107 | 146 | 1.1E-9 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 284 | 318 | 9.862871 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 284 | 325 | 12.045688 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 114 | 148 | 16.189545 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 325 | 366 | 11.377324 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 367 | 404 | 13.449252 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 199 | 236 | 11.471045 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 199 | 240 | 14.78598 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 114 | 148 | 13.31649 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 367 | 404 | 12.472858 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 344 | 358 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 303 | 317 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 133 | 147 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 218 | 232 | 4.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 303 | 317 | 4.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 133 | 147 | 4.7E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71840.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_048500202.1 | - | 0 |
| Q5I0B9 | Autophagy-related protein 16 OS=Xenopus tropicalis OX=8364 GN=atg16 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9QC84 | ANAPC4_WD40 domain-containing protein (Fragment) OS=Spinacia oleracea OX=3562 GN=SOVF_195520 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg27415 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_13286, gene_21422 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_5g115000, BVRB_6g133260, BVRB_9g219050 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13377, Sbi_jg52470 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9371 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013388 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl71153, Sgl71718, Sgl74735, Sgl75289 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000001851, gene:ENSEOMG00000005094 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.2BG0002820, CQ.Regalona.r1.2BG0002830 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30037180, pistato.v30037340 |
| Apiaceae | Apium graveolens | 2 | Ag7G00170, Ag9G02767 |
| Arecaceae | Cocos nucifera | 1 | scaffold003116G000040 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103711604 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.196.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G07047 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G71840.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018505m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp5g26870.v2.2, SpUn0020_0100.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g040040.2N, BniB03g049660.2N, BniB05g069130.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G1527, Ceq03G1529 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G1663, Cgl03G1664 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g01230 |
| Dunaliellaceae | Dunaliella salina | 3 | Dusal.1815s00001.v1.0, Dusal.2803s00002.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g06910, gene.Thate01g09720 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00007051, Pov_00030628 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb0G38178, Lb2G14336, Lb3G20589 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.2297, BH08.2437, CH09.2433 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0108500, gene-QOZ80_6BG0463510 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0116380.1, HORVU.MOREX.r3.3HG0230460.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_007844, gene-QYE76_034974, gene-QYE76_067822 |
| Poaceae | Oryza coarctata | 3 | Oco05G020450, Oco06G021210, Oco16G012050 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g48090.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G130100 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0204816, Pt_Chr0305097, Pt_Chr0604863 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr03G024010, Chr06G008860, Chr08G017490, Chr15G010410 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G582900, Tel2E01G264500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG052710, gene_TRIDC1BG060340 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G358200.1, TraesCS1B02G374800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb139680_P001, Zm00001eb362180_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-28048, nbis-gene-42254 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12025, Zma_g28009 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.340, evm.TU.LG15.608 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g02540 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.452 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-9802 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2261 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18040 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.705 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003159 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9580 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18708 |
| Salicaceae | Populus euphratica | 3 | populus_peu16674, populus_peu16680, populus_peu18837 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132603144, gene-LOC132603240, gene-LOC132603241 |
| Solanaceae | Solanum chilense | 1 | SOLCI003135100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107024210 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_14874 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G1221 |
| Zosteraceae | Zostera marina | 1 | Zosma04g00080.v3.1 |