Basic Information
Locus ID:
BVRB_5g114420
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
11S globulin seed storage protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 42220270 | 42242166 | + | BVRB_5g114420 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.21 | 38,690.82 Da | 34.24 | 89.33 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02243 | cupin_11S_legumin_C | 200 | 356 | 1.42441E-72 | - |
| Pfam | PF00190 | Cupin | 9 | 157 | 2.6E-17 | IPR006045 |
| Pfam | PF00190 | Cupin | 193 | 339 | 2.2E-16 | IPR006045 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | 12 | 347 | 9.39E-36 | IPR011051 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 11 | 183 | 5.9E-31 | IPR014710 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 195 | 357 | 6.3E-43 | IPR014710 |
| SMART | SM00835 | Cupin_1_3 | 7 | 161 | 3.1E-17 | IPR006045 |
| SMART | SM00835 | Cupin_1_3 | 192 | 342 | 1.4E-11 | IPR006045 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 297 | 315 | 1.7E-8 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 261 | 277 | 1.7E-8 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 213 | 233 | 1.7E-8 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 279 | 294 | 1.7E-8 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 319 | 336 | 1.7E-8 | IPR006044 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G07750.1 | RmlC-like cupins superfamily protein. | 0 |
| RefSeq | XP_010678486.1 | cocosin 1 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A0K9R739 | Cupin type-1 domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_098950 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology