Basic Information
Locus ID:
BVRB_5g111050
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
AMSH-like ubiquitin thioesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 29522004 | 29532581 | + | BVRB_5g111050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.67 | 58,016.71 Da | 54.39 | 85.38 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 341 | 515 | 1.92554E-107 | IPR044098 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 340 | 444 | 4.7E-18 | IPR000555 |
| Pfam | PF08969 | USP8 dimerisation domain | 9 | 105 | 4.7E-14 | IPR015063 |
| SUPERFAMILY | SSF140856 | USP8 N-terminal domain-like | 22 | 116 | 8.76E-6 | - |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 339 | 471 | 3.79E-21 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 1 | 116 | 2.7E-29 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 320 | 515 | 1.3E-71 | - |
| SMART | SM00232 | pad1_6 | 340 | 468 | 1.2E-17 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 341 | 471 | 31.930096 | IPR037518 |
| Coils | Coil | Coil | 91 | 111 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_010678011.1 | AMSH-like ubiquitin thioesterase 1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8VYB5 | AMSH-like ubiquitin thioesterase 1 OS=Arabidopsis thaliana OX=3702 GN=AMSH1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RBA7 | MPN domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_086080 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology