Basic Information
Locus ID:
BVRB_5g110990
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
Zinc finger protein VAR3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 29252212 | 29276683 | - | BVRB_5g110990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.34 | 42,959.68 Da | 48.48 | 65.38 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 297 | 325 | 2.0E-6 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 252 | 282 | 2.51E-5 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 328 | 359 | 5.97E-5 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 293 | 326 | 2.51E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 247 | 285 | 4.0E-10 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 328 | 360 | 2.7E-8 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 289 | 327 | 8.4E-13 | - |
| SMART | SM00547 | zf_4 | 332 | 356 | 0.023 | IPR001876 |
| SMART | SM00547 | zf_4 | 258 | 282 | 0.0011 | IPR001876 |
| SMART | SM00547 | zf_4 | 299 | 323 | 1.6E-4 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 256 | 285 | 8.998394 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 330 | 359 | 9.190362 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 297 | 326 | 10.229244 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 334 | 353 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 301 | 320 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 260 | 279 | - | IPR001876 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48570.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_010678000.1 | - | 0 |
| TrEMBL | A0A0K9QPR9 | Zinc finger protein VAR3, chloroplastic OS=Spinacia oleracea OX=3562 GN=SOVF_155050 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology