Basic Information
Locus ID:
BVRB_5g110220
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 25970581 | 25977853 | + | BVRB_5g110220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.93 | 114,077.35 Da | 51.89 | 61.44 | -0.78 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 463 | 787 | 2.7341E-40 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 466 | 498 | 8.1E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 574 | 611 | 1.3E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 761 | 787 | 8.0E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 617 | 653 | 0.0073 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 461 | 791 | 4.33E-60 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 451 | 816 | 2.3E-63 | IPR015943 |
| SMART | SM00320 | WD40_4 | 746 | 787 | 7.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 614 | 653 | 6.6E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 572 | 611 | 1.2E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 655 | 694 | 7.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 705 | 745 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 460 | 499 | 3.7E-8 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 766 | 796 | 9.806668 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 467 | 501 | 11.312864 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 579 | 614 | 12.288313 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 467 | 508 | 13.68318 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 579 | 620 | 15.420926 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 620 | 654 | 10.521959 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 620 | 654 | 12.647216 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 598 | 612 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 486 | 500 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 598 | 612 | 3.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 640 | 654 | 3.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 486 | 500 | 3.7E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 246 | 282 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 831 | 851 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 910 | 953 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 155 | 180 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 858 | 873 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 89 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 76 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 882 | 901 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 910 | 924 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 525 | 555 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 135 | 189 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 828 | 873 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37670.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_010677871.1 | WD repeat-containing protein 44 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9XSC3 | WD repeat-containing protein 44 OS=Bos taurus OX=9913 GN=WDR44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0J8CGL2 | WD_REPEATS_REGION domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_5g110220 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology