halophFGD

Basic Information

Locus ID: BVRB_5g109100

Species & Taxonomic ID: Beta vulgaris & 3555

Genome Assembly: GCA_000511025.2

Description: transposition, RNA-mediated

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5	21688605	21700056	+	BVRB_5g109100

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.27	84,018.37 Da	40.99	103.43	-0.01

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00303	retropepsin_like	13	108	8.64904E-12	-
Pfam	PF00646	F-box domain	283	320	2.3E-4	IPR001810
Pfam	PF08387	FBD	628	664	1.4E-6	IPR006566
SUPERFAMILY	SSF50630	Acid proteases	8	115	3.16E-5	IPR021109
SUPERFAMILY	SSF52047	RNI-like	410	672	8.63E-8	-
SUPERFAMILY	SSF81383	F-box domain	269	331	6.15E-9	IPR036047
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	338	546	4.2E-7	IPR032675
Gene3D	G3DSA:2.40.70.10	Acid Proteases	1	132	3.0E-27	IPR021109
SMART	SM00579	9598neu4hmm	627	709	0.0045	IPR006566
ProSiteProfiles	PS50181	F-box domain profile.	281	329	8.914593	IPR001810
MobiDBLite	mobidb-lite	consensus disorder prediction	238	263	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	241	263	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G04230.1	FBD, F-box and Leucine Rich Repeat domains containing protein.
RefSeq	XP_010677596.1	putative F-box/FBD/LRR-repeat protein At1g78760 [Beta vulgaris subsp. vulgaris]
Swiss-Prot	Q6NKX3	F-box/FBD/LRR-repeat protein At2g04230 OS=Arabidopsis thaliana OX=3702 GN=At2g04230 PE=2 SV=1
TrEMBL	A0A803N0D5	FBD domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg3430
Aizoaceae	Mesembryanthemum crystallinum	4	gene_14946, gene_2052, gene_21862, gene_26502
Amaranthaceae	Atriplex hortensis	48	Ah002915, Ah002920, Ah003004, Ah004139, Ah004140, Ah004142 ... Ah004143, Ah004144, Ah010182, Ah010183, Ah010184, Ah010185, Ah010189, Ah010190, Ah010191, Ah011613, Ah011617, Ah021837, Ah032644, Ah034167, Ah034178, Ah034223, Ah034224, Ah034225, Ah034226, Ah034227, Ah034228, Ah034229, Ah034230, Ah034231, Ah034232, Ah034236, Ah034237, Ah034238, Ah034239, Ah034241, Ah034248, Ah034250, Ah034251, Ah034252, Ah034253, Ah034254, Ah034255, Ah034410, Ah034415, Ah034837, Ah034839, Ah034896
Amaranthaceae	Beta vulgaris	4	BVRB_2g035510, BVRB_5g109100, BVRB_5g109110, BVRB_7g159590
Amaranthaceae	Salicornia bigelovii	21	Sbi_jg15817, Sbi_jg17979, Sbi_jg19532, Sbi_jg19533 ... Sbi_jg19534, Sbi_jg19535, Sbi_jg19536, Sbi_jg20316, Sbi_jg20627, Sbi_jg20631, Sbi_jg21721, Sbi_jg29867, Sbi_jg29869, Sbi_jg38800, Sbi_jg40147, Sbi_jg50068, Sbi_jg50070, Sbi_jg54075, Sbi_jg62024, Sbi_jg62603, Sbi_jg9514
Amaranthaceae	Salicornia europaea	14	Seu_jg10634, Seu_jg10635, Seu_jg1185, Seu_jg13817 ... Seu_jg16022, Seu_jg16987, Seu_jg1716, Seu_jg1717, Seu_jg17204, Seu_jg17879, Seu_jg17880, Seu_jg17881, Seu_jg19118, Seu_jg28729
Amaranthaceae	Suaeda aralocaspica	15	GOSA_00003627, GOSA_00009189, GOSA_00009190, GOSA_00009191 ... GOSA_00009192, GOSA_00009193, GOSA_00009194, GOSA_00009195, GOSA_00014547, GOSA_00016944, GOSA_00022487, GOSA_00022724, GOSA_00022726, GOSA_00022727, GOSA_00027758
Amaranthaceae	Suaeda glauca	41	Sgl00558, Sgl05572, Sgl18083, Sgl22021, Sgl22137, Sgl27283 ... Sgl27396, Sgl33675, Sgl35894, Sgl35909, Sgl35977, Sgl35984, Sgl38986, Sgl41276, Sgl41282, Sgl41299, Sgl56156, Sgl61596, Sgl61597, Sgl63414, Sgl63415, Sgl63419, Sgl63420, Sgl63442, Sgl63443, Sgl63444, Sgl63445, Sgl63813, Sgl65682, Sgl65683, Sgl67894, Sgl67895, Sgl67899, Sgl67900, Sgl67921, Sgl67922, Sgl67923, Sgl67924, Sgl68298, Sgl69997, Sgl69998
Amaranthaceae	Chenopodium album	51	gene:ENSEOMG00000005049, gene:ENSEOMG00000007202 ... gene:ENSEOMG00000007373, gene:ENSEOMG00000007602, gene:ENSEOMG00000016056, gene:ENSEOMG00000016396, gene:ENSEOMG00000017106, gene:ENSEOMG00000017456, gene:ENSEOMG00000017749, gene:ENSEOMG00000017965, gene:ENSEOMG00000018174, gene:ENSEOMG00000018215, gene:ENSEOMG00000018243, gene:ENSEOMG00000018263, gene:ENSEOMG00000018417, gene:ENSEOMG00000018597, gene:ENSEOMG00000018704, gene:ENSEOMG00000018989, gene:ENSEOMG00000019082, gene:ENSEOMG00000019375, gene:ENSEOMG00000019429, gene:ENSEOMG00000019801, gene:ENSEOMG00000019936, gene:ENSEOMG00000020328, gene:ENSEOMG00000020437, gene:ENSEOMG00000020456, gene:ENSEOMG00000020470, gene:ENSEOMG00000021807, gene:ENSEOMG00000022387, gene:ENSEOMG00000022409, gene:ENSEOMG00000022826, gene:ENSEOMG00000022893, gene:ENSEOMG00000023269, gene:ENSEOMG00000024591, gene:ENSEOMG00000024656, gene:ENSEOMG00000025138, gene:ENSEOMG00000027230, gene:ENSEOMG00000048632, gene:ENSEOMG00000048956, gene:ENSEOMG00000049212, gene:ENSEOMG00000049388, gene:ENSEOMG00000049477, gene:ENSEOMG00000049618, gene:ENSEOMG00000050075, gene:ENSEOMG00000050076, gene:ENSEOMG00000050099, gene:ENSEOMG00000050608, gene:ENSEOMG00000051001, gene:ENSEOMG00000051158, gene:ENSEOMG00000051276, gene:ENSEOMG00000051858
Amaranthaceae	Chenopodium quinoa	42	CQ.Regalona.r1.2AG0012770, CQ.Regalona.r1.2AG0012790 ... CQ.Regalona.r1.2AG0012810, CQ.Regalona.r1.2AG0012820, CQ.Regalona.r1.2AG0012830, CQ.Regalona.r1.2AG0012840, CQ.Regalona.r1.2AG0012850, CQ.Regalona.r1.2AG0012860, CQ.Regalona.r1.2AG0013410, CQ.Regalona.r1.2BG0011650, CQ.Regalona.r1.2BG0014480, CQ.Regalona.r1.2BG0014490, CQ.Regalona.r1.2BG0014510, CQ.Regalona.r1.2BG0014530, CQ.Regalona.r1.2BG0014540, CQ.Regalona.r1.2BG0014570, CQ.Regalona.r1.2BG0014580, CQ.Regalona.r1.2BG0014590, CQ.Regalona.r1.2BG0014630, CQ.Regalona.r1.2BG0014640, CQ.Regalona.r1.2BG0014650, CQ.Regalona.r1.2BG0014660, CQ.Regalona.r1.2BG0014700, CQ.Regalona.r1.2BG0014710, CQ.Regalona.r1.2BG0014730, CQ.Regalona.r1.2BG0015420, CQ.Regalona.r1.2BG0015430, CQ.Regalona.r1.2BG0018270, CQ.Regalona.r1.4AG0014490, CQ.Regalona.r1.5AG0011260, CQ.Regalona.r1.5AG0011270, CQ.Regalona.r1.5AG0011980, CQ.Regalona.r1.5BG0003820, CQ.Regalona.r1.5BG0003830, CQ.Regalona.r1.5BG0012080, CQ.Regalona.r1.5BG0012180, CQ.Regalona.r1.5BG0012740, CQ.Regalona.r1.8BG0016730, CQ.Regalona.r1.9AG0017330, CQ.Regalona.r1.9AG0017340, CQ.Regalona.r1.9AG0017350, CQ.Regalona.r1.9AG0017360
Anacardiaceae	Pistacia vera	1	pistato.v30150730
Brassicaceae	Brassica nigra	1	BniB01g014240.2N
Plantaginaceae	Plantago ovata	3	Pov_00039776, Pov_00040470, Pov_00040689
Poaceae	Lolium multiflorum	1	gene-QYE76_061951
Poaceae	Zoysia japonica	2	nbis-gene-29604, nbis-gene-29605
Portulacaceae	Portulaca oleracea	6	evm.TU.LG04.3150, evm.TU.LG04.3151, evm.TU.LG16.532 ... evm.TU.LG16.533, evm.TU.LG16.534, evm.TU.LG19.449
Solanaceae	Lycium barbarum	1	gene-LOC132627161
Solanaceae	Solanum chilense	1	SOLCI004431500
Tamaricaceae	Reaumuria soongarica	1	STRG.31115_chr11_+
Tamaricaceae	Tamarix chinensis	1	TC07G0268