Basic Information
Locus ID:
BVRB_5g108930
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
Lymphoid organ expressed yellow head virus receptor protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 21067205 | 21071596 | + | BVRB_5g108930 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.40 | 52,294.70 Da | 44.24 | 60.57 | -0.88 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06886 | Targeting protein for Xklp2 (TPX2) domain | 266 | 349 | 3.4E-26 | IPR027329 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 238 | 254 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 67 | 82 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 348 | 362 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 272 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 440 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 135 | 167 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 314 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 120 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 384 | 438 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 175 | 225 | - | - |
| Coils | Coil | Coil | 281 | 316 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35880.1 | TPX2 (targeting protein for Xklp2) protein family. | 0 |
| RefSeq | XP_010677584.1 | protein WVD2-like 4 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SJ62 | Protein WVD2-like 4 OS=Arabidopsis thaliana OX=3702 GN=WDL4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9QG30 | TPX2 domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_182970 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology