Basic Information
Locus ID:
BVRB_5g108900
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
Iron-sulfur cluster co-chaperone protein HscB
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 20966225 | 20973308 | + | BVRB_5g108900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.76 | 30,743.46 Da | 65.82 | 76.06 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06257 | DnaJ | 105 | 166 | 2.78338E-5 | IPR001623 |
| Pfam | PF07743 | HSCB C-terminal oligomerisation domain | 190 | 260 | 1.8E-16 | IPR009073 |
| SUPERFAMILY | SSF47144 | HSC20 (HSCB), C-terminal oligomerisation domain | 182 | 261 | 1.31E-16 | IPR036386 |
| SUPERFAMILY | SSF46565 | Chaperone J-domain | 104 | 177 | 5.5E-16 | IPR036869 |
| Gene3D | G3DSA:1.10.287.110 | DnaJ domain | 63 | 176 | 8.3E-33 | IPR036869 |
| Gene3D | G3DSA:1.20.1280.20 | - | 182 | 263 | 7.8E-20 | IPR036386 |
| TIGRFAM | TIGR00714 | hscB: Fe-S protein assembly co-chaperone HscB | 116 | 260 | 3.1E-26 | IPR004640 |
| ProSiteProfiles | PS50076 | dnaJ domain profile. | 105 | 177 | 10.087789 | IPR001623 |
| Hamap | MF_00682 | Co-chaperone protein HscB [hscB]. | 104 | 264 | 16.22905 | IPR004640 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06410.1 | DNAJ heat shock N-terminal domain-containing protein. | 0 |
| RefSeq | XP_010677577.1 | iron-sulfur cluster co-chaperone protein HscB homolog isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8L7K4 | Iron-sulfur cluster co-chaperone protein HscB homolog OS=Arabidopsis thaliana OX=3702 GN=HSCB PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RXC1 | J domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_024200 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg15179 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15271 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah003081 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g108900 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15791, Sbi_jg56581 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg13799 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001867 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51346, Sgl56593 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006555, gene:ENSEOMG00000023112 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.5BG0011890 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30276880 |
| Apiaceae | Apium graveolens | 1 | Ag3G00681 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103705745 |
| Asteraceae | Flaveria trinervia | 1 | Ftri2G33199 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G06410.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10014422m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g36440.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g054390.2N, BniB08g002610.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1257 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1418 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g00090 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0420s00011.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g39700 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8517 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1881 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00039601 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G13616, Lb4G25821 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.3387, BH05.3379, CH05.3498 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_5AG0389480 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0672240.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_021678, gene-QYE76_021692 |
| Poaceae | Oryza coarctata | 2 | Oco23G006070, Oco24G005690 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g27070.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G256300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0107719 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G015490, Chr0G005380, Chr19G010970 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G387800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG027020, gene_TRIDC7BG017550 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G213900.1, TraesCS7B02G121200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb161520_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-12511 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g25756 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2752, evm.TU.LG08.414 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g00250 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1077 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4112 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4953 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10177 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.601 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006167 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12511 |
| Salicaceae | Populus euphratica | 1 | populus_peu12388 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132625945 |
| Solanaceae | Solanum chilense | 1 | SOLCI006375400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011850 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.24991_chr08_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G0661 |
| Zosteraceae | Zostera marina | 1 | Zosma05g33210.v3.1 |